Jeremy Morel missed the game with Bordeaux but should return at left-back.
Gignac and Remy are both sidelined, so Jordan Ayew should continue to lead the line having been suspended in the league at the weekend.
Right-back Kassim Abdallah could return to the starting XI, though Charles Kabore could also move back into the defence to allow for a start for Joey Barton.
Caner Erkin may be favoured as a more defensive option over Stoch on the left despite being controversially sent off at the weekend.
Bekir Irtegun has taken his chance well in the absence of Egeman Korkmaz so should keep his place despite the centre-back's return to fitness.
Milos Krasic has been included in the squad this time, though Henri Bienvenu has been left out after expressing a desire to leave the club.
Prediction
Marseille are definitely in more need of a win on Thursday as they sit level on points with Gladbach but behind the German outfit due to their head-to-head record.
Fenerbahce know that a draw will be enough to see them qualify and may look to contain their French hosts and wait for their chances on the counter.
Baup's side are in poor form, struggling in the absence of a real striker to rely on to win just 1 of their last 8 matches in all competitions, and this is likely to be another tough encounter.